species:   Artha
pid:       MI0008305
parent:    ath-MIR1888a
paralog:   
locus:     5:7168870-7168969
matures:   ['UAAGUUAAGAUUUGUGAAGAA', 'CUUCAUAAAUCUUAGCUAA']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 5:7168870-7168969

17 out of bounds
20 alignments
18 proper strand
14 stranded perfect matches

       ***********************                                          *********************       
CCAAAUUUUUAAGUUAAGAUUUGUGAAGAAAGAGCUUUUAUAUAAGAGUUUUUAGGCUUAUAUUUAAAUUUUUUCUUCAUAAAUCUUAGCUAAGAUUUGG
(((((((((..(((((((((((((((((((((((.((..(((((((..(....)..)))))))..)).))))))))))))))))))))))))))))))))
---------UAAGUUAAGAUUUGUGAAGAA---------------------------------------------------------------------- l=21 a=8 c
--------------------------------------------------------------------------CUUCAUAAAUCUUAGCUAA------- l=19 a=0 c*
---------UAAGUUAAGAUUUGUGAAGAA---------------------------------------------------------------------- l=21 a=8 ma
--------------------------------------------------------------------------CUUCAUAAAUCUUAGCUAA------- l=19 a=0 ma*

--------UUAAGUUAAGAUUUGUGAAGAA---------------------------------------------------------------------- l=22 a=1 
---------UAAGUUAAGAUUUGUGA-------------------------------------------------------------------------- l=17 a=1 
---------UAAGUUAAGAUUUGUGAAG------------------------------------------------------------------------ l=19 a=2 
---------UAAGUUAAGAUUUGUGAAGAA---------------------------------------------------------------------- l=21 a=8 (c,ma)
---------UAAGUUAAGAUUUGUGAAGAu---------------------------------------------------------------------- l=21 a=1 
---------UAAGUUAAGAUUUGUGAgGAA---------------------------------------------------------------------- l=21 a=1 
---------UAAGUUAAGAUUUGUGAAGAAu--------------------------------------------------------------------- l=22 a=1 
-----------AGUUAAGAUUUGUGAAGAAAGAGu----------------------------------------------------------------- l=24 a=1 
-----------AGUUAAGAUUUGUGAAGAAAGAGC----------------------------------------------------------------- l=24 a=1 
-------------------UUUGUGAAGAAAGAGCUUUU------------------------------------------------------------- l=20 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111100
fn-111
